Yes, to clarify, always start with epoxy on bare metal first, then seam sealer making sure to stay in the recoat window of the epoxy. After seam sealer I went to another coat of epoxy on top of and within the seam sealer recoat window, or if out of the seam sealer recoat window sand/scuff it and then epoxy. It doesnt hurt to sand/scuff either way, and you can sometimes smooth it out a little more if needed.
I usually went this way with another coat of epoxy on top of the seam sealer because I was usually at the point of putting another coat of epoxy on anyhow. I would do any filler work, seam seal, and then seal it all off with epoxy and move on to 2k or poly primer.
Another thing, make sure you have your stuff in order. Have a process thought out thoroughly when it comes time to put sealer on and smooth it out, it sets up quicker then you think. A filler spreader works really good to smooth, and if needed can be trimmed to fit specific areas.